AI & Computational Science

Prior-Informed Flow Matching for Graph Reconstruction

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Graph embeddingNode2vec

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This paper presents Prior-Informed Flow Matching (PIFM), a new method for reconstructing complete graph structures from partial observations. The approach combines traditional graph embedding techniques like GraphSAGE or node2vec with continuous-time flow matching, first creating an initial estimate from local information and then refining it using rectified flow matching to align with the true distribution of complete graphs. Experiments across multiple datasets show that PIFM outperforms both classical embedding methods and current state-of-the-art generative models in reconstruction accuracy.


Graph reconstruction has applications in fields where complete network data is unavailable, including social network analysis, biological networks, and recommendation systems. By effectively combining prior knowledge with modern generative modeling, this method could improve predictions and analysis in domains where understanding full network structure is critical but only partial observations are available.


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Abstract: We introduce textit{Prior-Informed Flow Matching (PIFM)}, a conditional flow model for graph reconstruction. Reconstructing graphs from partial observations remains a key challenge; classical embedding methods often lack global consistency, while modern generative models struggle to incorporate structural priors. PIFM bridges this gap by integrating embedding-based priors with continuous-time flow matching. Grounded in a permutation equivariant version of the distortion-perception theory, our method first uses a prior, such as GraphSAGE or node2vec, to form an informed initial estimate of the adjacency matrix based on local information. It then applies rectified flow matching to refine this estimate, transporting it toward the true distribution of clean graphs and learning a global coupling. Experiments on different datasets demonstrate that PIFM consistently enhances classical embeddings, outperforming them and state-of-the-art generative baselines in reconstruction accuracy.

Source: Prior-Informed Flow Matching for Graph Reconstruction