Biology

Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue

AI Insight

This study presents a mathematical framework to model the extracellular dynamics of serotonin, a key neurotransmitter, in brain tissue at the microscale. The authors developed a two-dimensional compartmental reaction-diffusion system and used asymptotic methods to derive computationally efficient equations that capture how serotonin spreads and is reabsorbed around release sites called varicosities. The model demonstrates that clusters of varicosities can form diffusively coupled microdomains that act as localized serotonin reservoirs, offering quantitative predictions about how firing frequency, varicosity geometry, and reuptake kinetics collectively shape serotonin signaling.


This framework provides a theoretical basis for interpreting high-resolution serotonin imaging data and for understanding how selective serotonin reuptake inhibitors, a widely prescribed class of antidepressants, alter extracellular serotonin levels at the microscale. Better mechanistic insight into serotonin dynamics could inform the development and optimization of psychiatric treatments.


arXiv:2512.10983v2 Announce Type: replace
Abstract: Serotonin (5-hydroxytryptamine) is a major neurotransmitter whose release from densely distributed serotonergic varicosities shapes plasticity and network integration throughout the brain, yet its extracellular dynamics remain poorly understood due to the sub-micrometer and millisecond scales involved. We develop a mathematical framework that captures the coupled reaction-diffusion processes governing serotonin signaling in realistic tissue microenvironments. Formulating a two-dimensional compartmental-reaction diffusion system, we use strong localized perturbation theory to derive an asymptotically equivalent set of nonlinear integro-ODEs that preserve diffusive coupling while enabling efficient computation. We analyze period-averaged steady states, establish bounds using Jensen’s inequality, obtain closed-form spike maxima and minima, and implement a fast marching-scheme solver based on sum-of-exponentials kernels. These mathematical results provide quantitative insight into how firing frequency, varicosity geometry, and uptake kinetics shape extracellular serotonin. The model reveals that varicosities form diffusively coupled microdomains capable of generating spatial “serotonin reservoirs,” clarifies aspects of local versus volume transmission, and yields predictions relevant to interpreting high-resolution serotonin imaging and the actions of selective serotonin-reuptake inhibitors.

Source: Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue