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Biology

A geometry-dependent, force balance-driven model of Staphylococcus epidermidis biofilm cell cluster detachment

18. May 2026 by a3-admin

arXiv:2605.15364v1 Announce Type: new
Abstract: Biofilms, bacteria cells surrounded by a self-produced polymeric matrix, are common on medical devices and lead to many hospital infections. The…

Categories Biology

Brain-OF: An Omnifunctional Foundation Model for fMRI, EEG and MEG

18. May 2026 by a3-admin

arXiv:2602.23410v3 Announce Type: replace-cross
Abstract: Brain foundation models have achieved remarkable advances across a wide range of neuroscience tasks. However, most existing models are…

Categories Biology

Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction

18. May 2026 by a3-admin

arXiv:2604.26498v2 Announce Type: replace-cross
Abstract: The rapid growth of molecular foundation models and large language models has encouraged a scale centred view of AI in drug discovery, in…

Categories Biology

Convergent Representations of Linguistic Constructions in Human and Artificial Neural Systems

18. May 2026 by a3-admin

arXiv:2603.29617v2 Announce Type: replace
Abstract: Understanding how the brain processes linguistic constructions is a central challenge in cognitive neuroscience and linguistics. Recent…

Categories Biology

Detection of residual native state entropy changes upon mutation in Fyn SH3

18. May 2026 by a3-admin

arXiv:2605.14496v2 Announce Type: replace
Abstract: NMR relaxation experiments have shown that there are small but measurable changes in the native state dynamics of the Fyn SH3 domain associated…

Categories Biology

Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models

18. May 2026 by a3-admin

arXiv:2509.12266v2 Announce Type: replace
Abstract: We introduce Genome-Factory, the first integrated Python library for tuning, deploying, and interpreting genomic foundation models. Our core…

Categories Biology

SAE-RNA: A Sparse Autoencoder Model for Interpreting RNA Language Model Representations

18. May 2026 by a3-admin

arXiv:2510.02734v2 Announce Type: replace
Abstract: Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models…

Categories Biology

From Clever Hans to Scientific Discovery: Interpreting EEG Foundational Transformers with LRP

18. May 2026 by a3-admin

arXiv:2605.11885v1 Announce Type: cross
Abstract: Emerging foundation models (FMs) in electroencephalography (EEG) promise a path to scale deep learning in diagnostics and brain-computer interfaces…

Categories Biology

Reading the Cell, Designing the Cure: Perturbation-Conditioned Molecular Diffusion for Function-Oriented Drug Design

18. May 2026 by a3-admin

arXiv:2605.15243v1 Announce Type: cross
Abstract: When reliable target structures are unavailable at scale or phenotypes arise from dysregulated pathways, transcriptomic perturbations provide a…

Categories Biology

StateXDiff: Cell State-Contextualized Multimodal Diffusion for Single-Cell Perturbation Prediction

18. May 2026 by a3-admin

arXiv:2605.16104v1 Announce Type: new
Abstract: Predicting drug-induced cellular state changes at single-cell resolution remains a central challenge in virtual cell modeling, particularly under…

Categories Biology
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